HsaEX0033243 @ hg19
Exon Skipping
Gene
ENSG00000173120 | KDM2A
Description
lysine (K)-specific demethylase 2A [Source:HGNC Symbol;Acc:13606]
Coordinates
chr11:66899423-66902682:+
Coord C1 exon
chr11:66899423-66899544
Coord A exon
chr11:66902005-66902118
Coord C2 exon
chr11:66902585-66902682
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTACTTTTTTTTTGAGACAGTCA
3' ss Score
2.37
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GTTCTTGGGGTTTTTCTCTGTCTGTGAGTACTTGGTAAAAAGTTAAACCCTAAAGATAAAAGGCAGCAAATAGTGACCAAACGAATGTTTTTGGCAAATACATTGGTGAAGGCCTCCTTCAG
Seq A exon
TCAATCTGTTGCCGAGGCTGGAATGTAGTGGTGCGATCTCGGCTCACTTAAACCTCTGCCTCTTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG
Seq C2 exon
GCTGGAGTGCAATGGCGCGATCTCGTCTCACCACAACCTCCGCCTTCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173120-'2-4,'2-3,3-4
Average complexity
C3
Mappability confidence:
100%=100=25%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGGGGTTTTTCTCTGTCTGTG
R:
CTGTAATCCCAGCTACTCGGGA
Band lengths:
218-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)