HsaEX0033522 @ hg19
Exon Skipping
Gene
ENSG00000170871 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:28992]
Coordinates
chr4:6825912-6843931:+
Coord C1 exon
chr4:6825912-6826411
Coord A exon
chr4:6831772-6831897
Coord C2 exon
chr4:6843794-6843931
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTGTTTATTATTCTTATTAGGAG
3' ss Score
6.39
5' ss Seq
ACGGTAACT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GTTCTGCCGGAGACTTCCATTTGGCCTCAATGTGAAATTAAAGTAGAAAATCACATCTACATGCATGTTGCTATCAGGATGTTGATTCATTAGTCATGCCTGAAGAGGGAAAGTCTGTTTTAGGTGGCTGACTACCAGCAAAAATAAATGCTTATCCTACATGTCAAGCATCTCTACTTTTTACTGGAGTGAAAATCCCCTCCAGATACCAACAGAATATCAACTGCAGAAAATGCTTCACATTTTAAGGATGTCGGCAACCTAAATTCATGTACCCTATCTGTACAGTTGTTGTGGATGGTTTGCCATCTGAAAGCTCCTCAAGTTCTTATCCAGGCCCTGTGTCTGTTTCTGAAATGTCTCTGCTTCATGCTTTGGGTCCAGTGCAGACCTGGCTGGGACAAGAGCTCGAGAAATGTGGCATTGATGCCATGATTTACACTCGGTATGTCCTCAGTCTTCTGCTGCATGACAGCTATGACTACGACCTGCAGGAACAG
Seq A exon
GAGTCTGTGATGATAACAGAAAACCCAGCTCAATCTGGCTTAAACAGAAGTAATAGTAAAAGCAAACACATATGTATCATGTGCTGTGTGCCAGCCACTGTTGAAGGCACTCATTTTCCATTCACG
Seq C2 exon
GAGAATGACATCTTCCTGGGCTGGGAAAAAGGAGCTTATAAGAAATGGGGAAAGAGTAAGAAAAAATGTTCAGATCTAACTCTAGAAGAAATGAAAAAACAGGCTGCTGTCCAGTGTCTTCGATCTGCTTCTGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170871-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.214 C2=0.000
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PU(4.2=70.1),PF144001=Transglut_i_TM=PU(13.0=15.6)
A:
PF153761=DUF4603=PD(35.6=73.8),PF153761=DUF4603=PU(0.2=4.8)
C2:
PF153761=DUF4603=FE(3.7=100),PF144001=Transglut_i_TM=PU(54.1=87.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCATGCTTTGGGTCCAG
R:
GAAGACACTGGACAGCAGCC
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)