HsaEX0034026 @ hg38
Exon Skipping
Gene
ENSG00000164659 | KIAA1324L
Description
KIAA1324 like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr7:86964904-87059699:-
Coord C1 exon
chr7:87059325-87059699
Coord A exon
chr7:87039756-87039871
Coord C2 exon
chr7:86964904-86965024
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTGGCACTCCCTAGTGA
3' ss Score
6.14
5' ss Seq
TCGGTATGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
CGTGACGGGAGCATCGGCGCTGGCTGCCCGGGCCGCGAGCGCAGCAGAGCTGTCAGCGGGCGGACGGGCAGCGGGTGACGGAGCGGCGAGACGAGCGCACAGCAGTCGCGGCCCGGGAGCCGGAGCTGCCGCCGCACCCCGGGAAGGCTGCCTTGCCGCCGGCCCGCCGACCGCGGCCGGACGAAGATGCTGTTCCGCGCCCGGGGGCCGGTACGGGGCAGGGGCTGGGGGCGGCCGGCGGAGGCTCCCCGCCGCGGGCGCTCGCCGCCCTGGAGCCCCGCCTGGATTTGCTGCTGGGCGCTCGCCGGCTGCCAGGCGGCCTGGGCTGGGGACCTGCCCTCCTCCTCCAGCCGCCCGCTTCCTCCTTGCCAGGAG
Seq A exon
TGAGATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCACGCTGGGAGCTGTAGACCAGAGCTGTTCCTATTCGGCCATCTTGGCTCCTCCCTCG
Seq C2 exon
AAAGATTATCACTTTGAATATACGGAATGTGATAGCAGTGGCTCCAGGTGGAGAGTTGCCATTCCAAATTCTGCAGTGGACTGCTCTGGCCTGCCTGACCCAGTGAGAGGCAAAGAATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164659_MULTIEX2-1/3=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGACGAAGATGCTGTTC
R:
GCCACTGCTATCACATTCCGT
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development