HsaEX0034331 @ hg19
Exon Skipping
Gene
ENSG00000213213 | KIAA1984
Description
KIAA1984 [Source:HGNC Symbol;Acc:28236]
Coordinates
chr9:139701422-139702193:+
Coord C1 exon
chr9:139701422-139701518
Coord A exon
chr9:139701733-139701804
Coord C2 exon
chr9:139702024-139702193
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTGTTAATTTCTCCGAAAGGAG
3' ss Score
3.12
5' ss Seq
AAGGCCTGG
5' ss Score
-3.82
Exon sequences
Seq C1 exon
GGCGACACAAAGGTGAGGGACACCCTGGAGTCCTCGACTCTGATGGAGAAGTACAACACCAGGATCAGCTTTGAGAACCGGGAGGAGGATATGATCG
Seq A exon
GAGGAGGCATGCCATGCCAGACGGGCCCGGAGGAGAGGCACCAGGGCTGGAGCAGGGAGGAGCGCGGTGAAG
Seq C2 exon
ACACCTTCCAGTTCCCCGACATGGACCACAGCTACGTCCCTTCGCGCGCCGAGATCAAGAGGCAGGCGCAGCGGCTAATCGAGGGGAAGCTCAAGGCGGCCAAGAAAAAGAAGAAGTAGCCCCGCCGCCCCGCTCCCTGCTTTGCTACACAAATAAACATTTTTCCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213213-'14-21,'14-20,15-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=0.449
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTCGACTCTGATGGAGA
R:
TCTTTTTCTTGGCCGCCTTGA
Band lengths:
180-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)