HsaEX0034359 @ hg19
Exon Skipping
Gene
ENSG00000134313 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:29508]
Coordinates
chr2:8867017-8873810:-
Coord C1 exon
chr2:8873574-8873810
Coord A exon
chr2:8867319-8867397
Coord C2 exon
chr2:8867017-8867073
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATTCCCACCTTCTCTTCCAGGCG
3' ss Score
10.57
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTACTAGAAATGAGAAACGCAGAAAGCCACGTGGTCCCTGAAGACCCACGTTTCCTCAGTGAGAGCAGCAGTGGCCCAGCCCCGCACGGTGAGCCTGCTCGCCGCGCTTCCCACAACGAGCTGCCTCACACCGAGCTCTCCAGCCAGACGCCCTACACACTCAACTTCAGCTTCGAAGAGCTGAACACGCTTGGCCTGGATGAAGGTGCCCCTCGTCACAGTAATCTAAGTTGGCAG
Seq A exon
GCGCACGCCGACACTGGGCGGAAGGGAAGAAACCAGTGGGGATACTGTTCTTTTGCGGGGGCAGCATGAGCAGACTCAG
Seq C2 exon
GAAGAAAATGCTGGCCTTGAGATAGATAGCTCTTCAGAGGATCCAGATTAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.728 A=0.182 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACGAGCTGCCTCACAC
R:
ATCTGGATCCTCTGAAGAGCT
Band lengths:
174-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)