HsaEX0034920 @ hg38
Exon Skipping
Gene
ENSG00000150045 | KLRF1
Description
killer cell lectin like receptor F1 [Source:HGNC Symbol;Acc:HGNC:13342]
Coordinates
chr12:9827481-9833452:+
Coord C1 exon
chr12:9827481-9827629
Coord A exon
chr12:9832316-9832414
Coord C2 exon
chr12:9833303-9833452
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCATGTGATTAATGTCTCAGATT
3' ss Score
5.44
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATTTCATGTTATACTTAATAAAACAAAACATACCTGTATACACACACATTCACTCACATTGAAGATGCAAGATGAAGAAAGATACATGACATTGAATGTACAGTCAAAGAAAAGGAGTTCTGCCCAAACATCTCAACTTACATTTAAAG
Seq A exon
ATTATTCAGTGACGTTGCACTGGTATAAAATCTTACTGGGAATATCTGGAACCGTGAATGGTATTCTCACTTTGACTTTGATCTCCTTGATCCTGTTGG
Seq C2 exon
TTTCTCAGGGAGTATTGCTAAAATGCCAAAAAGGAAGTTGTTCAAATGCCACTCAGTATGAGGACACTGGAGATCTAAAAGTGAATAATGGCACAAGAAGAAATATAAGTAATAAGGACCTTTGTGCTTCGAGATCTGCAGACCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150045-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTCTGCCCAAACATCTCA
R:
GGTCTGCAGATCTCGAAGCAC
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development