HsaEX0035093 @ hg19
Exon Skipping
Gene
ENSG00000115919 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:6469]
Coordinates
chr2:143638914-143640604:+
Coord C1 exon
chr2:143638914-143638999
Coord A exon
chr2:143639509-143639667
Coord C2 exon
chr2:143640455-143640604
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTGTAGAGA
3' ss Score
10.07
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GAATATAAAGAATGGCTTATCAGTGGAGACCATCGACAGTTGAGAAAAGAAGAAGCCCAAAAAGTACAAGAATGAAAATCGAGAGT
Seq A exon
AGATGACATCTTGCTACGTTGTCCAGACTGGTCTCAAACTCCTGGCTTCAAGCAATCCCCTGCCTCGGCCTCCCAGTGCTGGGGTAACAGGTGTGAACCACCACAACCAGCCTGCTAAACTGAATTCCAATTTCCCTCCTCAAAATTTTTCTTCCCCAG
Seq C2 exon
ATCCTTGAGGAATCACCACACTGTCTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTGTTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATCGCCATTCTAACCGACATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115919-'2-3,'2-2,3-3
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGCTTATCAGTGGAGACCA
R:
TCATGTCGGTTAGAATGGCGA
Band lengths:
226-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)