HsaEX0035303 @ hg19
Exon Skipping
Gene
ENSG00000058085 | LAMC2
Description
laminin, gamma 2 [Source:HGNC Symbol;Acc:6493]
Coordinates
chr1:183209427-183228206:+
Coord C1 exon
chr1:183209427-183209526
Coord A exon
chr1:183227244-183227270
Coord C2 exon
chr1:183227857-183228206
Length
27 bp
Sequences
Splice sites
3' ss Seq
GCATCTTTTCCTTCCTACAGGAG
3' ss Score
10.91
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTGATTACAGAAGCCCAGAAGGTTGATACCAGAGCCAAGAACGCTGGGGTTACAATCCAAGACACACTCAACACATTAGACGGCCTCCTGCATCTGATGG
Seq A exon
GAGCCCATGGAGGAGAGGCACCAACAG
Seq C2 exon
ACCCTGCACTTGATGGACCAGCTGGCACCACCCAGATCAATAAACTGGCTTATTTGAATTTGCGGCCCCCCACCCAGGAACTGACTCAGTGCAAGAAGACAGCTTCGACTCCCTGTGATTTCATCTCTGACCAATCCGCACTCCTGGCTCACTGGCTTCCCCAACCCATGAAGTTTTCCTTAAAAACTCTGCTCCCGAAATGCTCAGGGAGACTGATTTGATAACAATAAAACTCTGGTCTCCCGCACAGCCGGCTCTGCGTGAATTACTCTTTCTCTATTGCAATTCCCCTGTCTTGATGAATCTGCTCTGTCTAGGCAGCGAGCAAGGTGAACCCCTTGGGTGGTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000058085_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAGACGGCCTCCTGCATCT
R:
ACTGAGTCAGTTCCTGGGTGG
Band lengths:
116-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)