HsaEX0035427 @ hg19
Exon Skipping
Gene
ENSG00000154227 | LASS3
Description
ceramide synthase 3 [Source:HGNC Symbol;Acc:23752]
Coordinates
chr15:101041882-101061961:-
Coord C1 exon
chr15:101061872-101061961
Coord A exon
chr15:101043915-101044053
Coord C2 exon
chr15:101041882-101042055
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACCCGATTTGCATCCCACAGATG
3' ss Score
8.07
5' ss Seq
CAGGCATGT
5' ss Score
2.05
Exon sequences
Seq C1 exon
GGATGTTGTGAAACAAAAGCTGACATTTATATATATATACATATATACAGTATTTGAGTTCCTCAGTAGAAAGCTATCATATATACTCAG
Seq A exon
ATGGCGTTATTCCCTCTGGTCCCCACTGCTCTGGCCAAACCTTCTCTCTGCTGACTGCATCTATTGCTGTGAGCTGATTGTCCTCTAGTTTCTCCATCTCCTGAGGCATGCTTCACACCACTGCCAGAAGAGCTGCCAG
Seq C2 exon
AATGTTTTGGACGTTTAAAGAATGGTTCTGGTTGGAAAGATTCTGGCTTCCTCCAACAATAAAGTGGTCAGATCTTGAGGATCACGATGGACTCGTCTTTGTAAAACCTTCTCATTTATACGTGACAATTCCATATGCTTTTCTCTTGCTGATTATCAGACGTGTATTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154227_MULTIEX1-3/12=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTTGTGAAACAAAAGCTGACA
R:
ACACGTCTGATAATCAGCAAGAGA
Band lengths:
255-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)