HsaEX0035515 @ hg19
Exon Skipping
Gene
ENSG00000184925 | LCN12
Description
lipocalin 12 [Source:HGNC Symbol;Acc:28733]
Coordinates
chr9:139848606-139849851:+
Coord C1 exon
chr9:139848606-139848707
Coord A exon
chr9:139849176-139849278
Coord C2 exon
chr9:139849823-139849851
Length
103 bp
Sequences
Splice sites
3' ss Seq
GGAGCTTGGACTCATCCCAGGAG
3' ss Score
0.76
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
GCAGGAGCTGGTTGCTGCCTCCCGGGACGCTGGACCAGTTCATCTGCCTGGGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCCCAGATGTGACTG
Seq A exon
GAGGTGCCCTGGACCTCAGCAGCCTGCCCTGGGTGGCAGCCCCAGCCTGACCACTCAGACAGCCGCGGCCCCCAAGGCCTGACTCTTCTTGTGGGAGGGCGAG
Seq C2 exon
GCTGGTCACCCCAGGCCAGCGTCTGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184925_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
75%=75=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(23.4=100)
A:
NO
C2:
PF0006118=Lipocalin=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCTGGACCAGTTCATCTG
R:
TCAACAGACGCTGGCCTGG
Band lengths:
106-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)