HsaEX0036147 @ hg19
Exon Skipping
Gene
ENSG00000129038 | LOXL1
Description
lysyl oxidase-like 1 [Source:HGNC Symbol;Acc:6665]
Coordinates
chr15:74218792-74235303:+
Coord C1 exon
chr15:74218792-74220226
Coord A exon
chr15:74234216-74234399
Coord C2 exon
chr15:74235195-74235303
Length
184 bp
Sequences
Splice sites
3' ss Seq
TGGTTTCTGCTTATTCCTAGTAA
3' ss Score
4.9
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
TTTCGTGTACTACCGGCCCGCGGGCGGCGGCGTGGGCGCGGGGGCGGCGGCCGTGGCCTCGGCGGGGGTCATCTACCCCTACCAGCCCCGGGCGCGCTACGAGGAGTACGGCGGCGGCGAAGAGCTGCCCGAGTACCCGCCTCAGGGCTTCTACCCGGCCCCCGAGAGGCCCTACGTGCCGCCGCCGCCGCCGCCCCCCGACGGCCTGGACCGCCGCTACTCGCACAGTCTGTACAGCGAGGGCACCCCCGGCTTCGAGCAGGCCTACCCTGACCCCGGTCCCGAGGCGGCGCAGGCCCATGGCGGAGACCCACGCCTGGGCTGGTACCCGCCCTACGCCAACCCGCCGCCCGAGGCGTACGGGCCGCCGCGCGCGCTGGAGCCGCCCTACCTGCCGGTGCGCAGCTCCGACACGCCCCCGCCGGGTGGGGAGCGGAACGGCGCGCAGCAGGGCCGCCTCAGCGTGGGCAGCGTGTACCGGCCCAACCAGAACGGCCGCG
Seq A exon
TAACTCCTGCTCAGACTCCTGCATGCCCAGGGAGGAAGGTGGAGGGGCAGGAACAGGACGGACAGGCCCCGGGCTCTGGCACATCCTGGGGAACAAGGGACCACAAGGACGGGGGCAGTCTCCAGACTTCCCCTGGGCGCTTGACCCCAGGCCTTGCAGGGGAGAGAGCCAGGGCCTCCCTCAG
Seq C2 exon
GTCTCCCTGACTTGGTCCCAGACCCCAACTATGTGCAAGCATCCACTTATGTGCAGAGAGCCCACCTGTACTCCCTGCGCTGTGCTGCGGAGGAGAAGTGTCTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129038_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=1.000 C2=0.360
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0118612=Lysyl_oxidase=PU(16.6=91.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTACCCGCCCTAC
R:
GGGCTCTCTGCACATAAGTGG
Band lengths:
244-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)