HsaEX0036163 @ hg19
Exon Skipping
Gene
ENSG00000138131 | LOXL4
Description
lysyl oxidase-like 4 [Source:HGNC Symbol;Acc:17171]
Coordinates
chr10:100022500-100028007:-
Coord C1 exon
chr10:100027889-100028007
Coord A exon
chr10:100027388-100027579
Coord C2 exon
chr10:100022500-100022808
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATTGCTCTGCCTTCTTCCAGGGA
3' ss Score
10.72
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCTGGGGGGCCGCGGGCGGGAGGCGGATAAAAAGGCCCCAGGGCGCCCGGGGAGGGAGCCCGTTAGCGCTGCTCCGCCGCGGCGCCCGCCCAGCCCCGGACTGTCCGCGCTCCATCTG
Seq A exon
GGAGGAGACAGGGAAGGGGCAAGGCGGGTTCAGATGTCACACTTACGACTTGGGGGACAACGAACCAGGGCTGATCTGGGCTCTCCAACTATCCAGACCGGAGCTGATTATGTTGGGGGGTCGGCGTGTGACAGAAACACCGAAGGGAAGGGGGCAGAAGACTTCAAGCCCCCTCTTTCCTAGCCTGGACAG
Seq C2 exon
GTATCTTGGCCTCAGCTGTCCTTGAAGTCACCATGGCGTGGTCCCCACCAGCCACCCTCTTTCTGTTCCTGCTGCTGCTAGGCCAGCCCCCTCCCAGCAGGCCACAGTCACTGGGCACCACTAAGCTCCGGCTGGTGGGCCCAGAGAGCAAGCCAGAGGAGGGCCGCCTGGAGGTGCTGCACCAGGGCCAGTGGGGCACCGTGTGTGATGACAACTTTGCTATCCAGGAGGCCACAGTGGCTTGCCGCCAGCTGGGCTTCGAAGCTGCCTTGACCTGGGCCCACAGTGCCAAGTACGGCCAAGGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138131-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.172
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0053013=SRCR=PU(57.7=60.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATAAAAAGGCCCCAGGG
R:
CCTCCTCTGGCTTGCTCTCT
Band lengths:
257-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)