HsaEX0036699 @ hg38
Exon Skipping
Gene
ENSG00000136802 | LRRC8A
Description
leucine rich repeat containing 8 family member A [Source:HGNC Symbol;Acc:HGNC:19027]
Coordinates
chr9:128886015-128909321:+
Coord C1 exon
chr9:128886015-128886121
Coord A exon
chr9:128892067-128892158
Coord C2 exon
chr9:128907157-128909321
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTGTCCTCATCACAGCCC
3' ss Score
8.43
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGAGGCAGCGTCCATGGAGCAAAAGGAATGCCAGGATCCTGCACAGGCAGACGCGGGCCAGCCTCAGCACCGACAGCCGACGCGCAGATAGCAGAGCCATCCTTGGG
Seq A exon
CCCTCCAAGCAATAGACTTGTCAACCCATTTTACAGATGAGGAAACCAGAGCCCAGCGAGGTGAAGGGACTTTCTCACGGTCTCGTGGTGAG
Seq C2 exon
GTTGAACCATGATTCCGGTGACAGAGCTCCGCTACTTTGCGGACACGCAGCCAGCATACCGGATCCTGAAGCCGTGGTGGGATGTGTTCACAGACTACATCTCTATCGTCATGCTGATGATTGCCGTCTTCGGGGGGACGCTGCAGGTCACCCAAGACAAGATGATCTGCCTGCCTTGTAAGTGGGTCACCAAGGACTCCTGCAATGATTCGTTCCGGGGCTGGGCAGCCCCTGGCCCGGAGCCCACCTACCCCAACTCCACCATTCTGCCGACCCCTGACACGGGCCCCACAGGCATCAAGTATGACCTGGACCGGCACCAGTACAACTACGTGGACGCTGTGTGCTATGAGAACCGACTGCACTGGTTTGCCAAGTACTTCCCCTACCTGGTGCTTCTGCACACGCTCATCTTCCTGGCCTGCAGCAACTTCTGGTTCAAATTCCCGCGCACCAGCTCGAAGCTGGAGCACTTTGTGTCTATCCTGCTGAAGTGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136802_MULTIEX1-3/5=2-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.011
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF125343=DUF3733=WD(100=9.0),PF125343=DUF3733=WD(100=8.3),PF127992=LRR_4=WD(100=5.8),PF138551=LRR_8=WD(100=8.5),PF127992=LRR_4=WD(100=6.3),PF138551=LRR_8=PU(18.6=1.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAATGCCAGGATCCTGC
R:
CTGTGAACACATCCCACCACG
Band lengths:
179-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development