HsaEX0037065 @ hg19
Exon Skipping
Gene
ENSG00000150556 | LYPD6B
Description
LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:27018]
Coordinates
chr2:150061767-150064926:+
Coord C1 exon
chr2:150061767-150061918
Coord A exon
chr2:150062533-150062709
Coord C2 exon
chr2:150064828-150064926
Length
177 bp
Sequences
Splice sites
3' ss Seq
TAACCCTCCTTTCTTTTCAGACA
3' ss Score
10.22
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
ATATAAGAGTTCGGACCGCCCAGCACACAAGGTCAGCATGCTGCTCCTCTGTCACGCTCTCGCTATAGCTGTTGTCCAGATCGTTATCTTCTCAGAAAGCTGGGCATTTGCCAAGAACATCAACTTCTATAATGTGAGGCCTCCTCTCGACC
Seq A exon
ACAAGTAAAACGTCTTTGATATACTTTATTAGAGAGTGATTCTTATAAATAAAAAATTATTTGGTATACATGTGGGTACCTGTAGTTCCCACGCCTGGAAGAGTATCAGAATCATGATGAAAGGATTTTTAACTGCATATCCCTAATCACTTCTCCAGAGATTTAACAGTCAAGAGG
Seq C2 exon
CTACACCATTTCCAAATAGCTTCAAGTGCTTTACTTGTGAAAACGCAGGGGATAATTATAACTGCAATCGATGGGCAGAAGACAAATGGTGTCCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150556_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATAAGAGTTCGGACCGCCCA
R:
ACACCATTTGTCTTCTGCCCA
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)