HsaEX0037865 @ hg19
Exon Skipping
Gene
ENSG00000173838 | MARCH10
Description
membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:26655]
Coordinates
chr17:60879007-60885705:-
Coord C1 exon
chr17:60885438-60885705
Coord A exon
chr17:60882261-60882408
Coord C2 exon
chr17:60879007-60879113
Length
148 bp
Sequences
Splice sites
3' ss Seq
AAGTTTTCCCCATTGTTCAGGGC
3' ss Score
6.15
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GGTTGCTAGGGAAACCGGAGGACGCCCGGTAGCCGCCCCCACCGCCTCCGCCCCAGGCAAGGCCGGCCGGCGCCGCGGAAAGCAGCCTCGGGGAAGGAGGAGGAAGAGGGGCAGGTGTAGGGAGTGAAGAAGCAAAAAGAGGAGGAGGAAGAGGAGCTCAGGGCCGTCCCCGCGCAATTAATGGGCGGCTCCTGCGCCCTGGACCGGCCCGCCCGCCCAGCCCCTCGACCCCTGTAGCCCCGGCAGGGGAGGAAGGGCAGACCCACAG
Seq A exon
GGCCAGATGATAAACCATGTGAGATTTCATAACTACCAGACCAGACGCTGGGTCACCATGAGTCCGGGGCGGCCTGACTCTGCCAATATCTGCACAACTGAATAAACAGGAGGAGCGAGGGAATGCCGCAGAACGTATACACCTGAAG
Seq C2 exon
GTCAGGGATTAGGAATCATGTTGCATGACGCAAGGGACAGGCAGAAGTTCTTCAGCGATGTTCAGTATCTGCGGGACATGCAGCATAAGGTGGACTCTGAGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173838_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.092
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGTGTAGGGAGTGAAGA
R:
CCACCTTATGCTGCATGTCCC
Band lengths:
252-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)