HsaEX0038044 @ hg19
Exon Skipping
Gene
ENSG00000015479 | MATR3
Description
matrin 3 [Source:HGNC Symbol;Acc:6912]
Coordinates
chr5:138609527-138611839:+
Coord C1 exon
chr5:138609527-138609854
Coord A exon
chr5:138610053-138610118
Coord C2 exon
chr5:138611810-138611839
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCCTCTTCTCCCTAGGGA
3' ss Score
12.02
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
AGGACACACAGATTCTCTCCTGAGCAGCTGCGAACTATGCGCCCCTTCTACCCTTAAGAGATGGGATGGGAGTCCAACAAACCCAGCCATTGCTCAGACCCCAGCCCTTCTCTCCTCTAAGAAGCAGGTTCACCTCTGCCACCGCACTCGCATTTTTTTTTTTTTTTAAAGCCCGGCCTTTCCTAGGCGGGGTCAAGGGCCCCGCCCACCGAAGCCACGCCCAGTAGCCGCCCCGGGGCGGGGTTCCCCTCGGCTCCCGGCTGCCCTTTCCCCTCCGGCCTCTGCCGGTGCTGCTGCGCCCTGCGGAGCTCCGAACACGTGCGCGTGA
Seq A exon
GGAGTCCCATAGAGCCTGACTCCGAGAGCCTCGATCTCCCAGGGCCAGAGGCAGGGACTTTGGAAG
Seq C2 exon
AGAGGCTGGCTGTGGCAGATGCAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000015479-'1-2,'1-0,2-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.917
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCTAGGCGGGGTCAAGG
R:
AGTTGCATCTGCCACAGCC
Band lengths:
177-243
Functional annotations
There are 1 annotated functions for this event
PMID: 31911676
This event
[CRISPR screen]. Non-conserved poison exon with negative fitness/survivability impact when depleted: HeLa Depleted at 14 days (FC=0.706, FDR=0.000), PC9 No Change at 14 days (FC=0.841, FDR=0.009), Late Xenograft No change (FC=1.288, FDR=0.298).
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)