HsaEX0038048 @ hg19
Exon Skipping
Gene
ENSG00000015479 | MATR3
Description
matrin 3 [Source:HGNC Symbol;Acc:6912]
Coordinates
chr5:138614740-138618678:+
Coord C1 exon
chr5:138614740-138614818
Coord A exon
chr5:138615624-138615747
Coord C2 exon
chr5:138618428-138618678
Length
124 bp
Sequences
Splice sites
3' ss Seq
AATCAATTTCTTAATCTCAGAAT
3' ss Score
5.19
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATGCCTTCACCTGAATGACATCTACCTCCATCAGGACCCCAGATGTCTGACAGCCCTGTGTGACACCAAGATAAGTAAC
Seq A exon
AATCTGGCTGCTGACTACCCTATTGGACAACTCCAATATTAGAGAACATTTCCACCAATTCAGAAAGTTTATTATGCACTGCTGTTCTAGAGCAGGGATCAGCAAACTTGCTGTAAAGAGCCAG
Seq C2 exon
GATCCCGTTGAAGATACCACATTACACTTAGGCTCCTGTTGGCCATGACAGCTTCTTAGACTTGTTTTTAATGACCTTGACAGTTTTGTTTTTTTGTTTGTTTGTTTTTGAGACGGAGTCTCTGTCATCCAGGCTGGAGTGCAATGTAATGGCTCAATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGGCATGAGCCACCGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000015479-'7-8,'7-7,11-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCAGGACCCCAGATGTCT
R:
GGAGAATCACTTGAACCCGGG
Band lengths:
255-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)