HsaEX0038080 @ hg38
Exon Skipping
Gene
ENSG00000204406 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:148051896-148054449:+
Coord C1 exon
chr2:148051896-148051996
Coord A exon
chr2:148053933-148054050
Coord C2 exon
chr2:148054391-148054449
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCTATGACAGGGT
3' ss Score
9.64
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CTGTTTTTTTAAAGAGCTTGATAAGGACTGACATTAATTTTTCTTGAATGGTAGAATTCGCCAGTGAAGCCATCTAGTCCTGGGCTTTTTATTTCTATAAG
Seq A exon
GGTTTTGCTTTGTCATCCTGGCCAGAGTGCAGTGGCACAATCACAGCTCACTGCAACCTCGACCTCCTGGGCTCAAGTGATTCTCCCACCTCAGCCTGCTGAGTAGCTGGGACTACAG
Seq C2 exon
CCCACATATGACAGTGGACATAGAGGACAACGCAGATATAGAACATTTCTTTTATCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204406-'10-16,'10-15,11-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTAAAGAGCTTGATAAGGACTGA
R:
AGAAATGTTCTATATCTGCGTTGTCC
Band lengths:
146-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development