HsaEX0038656 @ hg19
Exon Skipping
Gene
ENSG00000160563 | MED27
Description
mediator complex subunit 27 [Source:HGNC Symbol;Acc:2377]
Coordinates
chr9:134759445-134769379:-
Coord C1 exon
chr9:134769272-134769379
Coord A exon
chr9:134763331-134763420
Coord C2 exon
chr9:134759445-134759486
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTGTCACCATTTTCACCAGTTC
3' ss Score
5.81
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTGACCTTGGGAAAGGTGTTGAAAGTGATCGTCGTCATGCGGAGCCTGTTCATTGATCGAACAATAGTAAAGGGATATAACGAGAATGTCTACACAGAAGATGGCAAG
Seq A exon
TTCTTCCTGTGTGTCAAGAGGTCTTTTGATGTCTTGGTGTTTGCCCTGAGAACAGACGTGTCTGTGCTGAAGCAATTGGTCATCTGCAAG
Seq C2 exon
CTTGATATATGGTCCAAATCCAACTATCAAGTATTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160563_MULTIEX1-5/6=4-6
Average complexity
S
Mappability confidence:
90%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF115713=Med27=PU(3.4=8.3)
A:
PF115713=Med27=PU(2.3=6.7)
C2:
PF115713=Med27=FE(14.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGGAAAGGTGTTGAAAGTG
R:
CTGGAATACTTGATAGTTGGATTTGG
Band lengths:
143-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)