HsaEX0038723 @ hg19
Exon Skipping
Gene
ENSG00000145794 | MEGF10
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:29634]
Coordinates
chr5:126626523-126667116:+
Coord C1 exon
chr5:126626523-126626748
Coord A exon
chr5:126635688-126635738
Coord C2 exon
chr5:126666983-126667116
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCATTGTACCTTGATTATAGATT
3' ss Score
5.76
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
ACTTTCCCGGTGCGCAAAACTGGGCGACTGGGAACGCGTTGAGACGTTCCTCTTTCCCGCTTCTCCACCTTTACGCCTGAAAGAAGACTCCCAAAGATTGCTTTCTTCTGGGACGCTGCTTGGACGCTAACCGCGTTGATTGGAACAGATTTTGTGTCTTGGCTGGCTTTGGGTGAAGACCGGGGAGAAAAGGTTGCGCTGCGATTCTCAAGATCTCTGGACCTGG
Seq A exon
ATTATCATTGCAAATCCATTAAAGAAGGAGAAGCAAGCGGATTTCAGAGAG
Seq C2 exon
GTTGTTCTTCAGAAAAAAATGGTTATTTCTTTGAACTCATGCCTGAGCTTTATTTGTTTATTGTTATGCCACTGGATTGGGACAGCATCACCTCTGAATCTTGAAGACCCTAATGTGTGTAGCCACTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145794-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(12.3=23.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGACCGGGGAGAAAAGGT
R:
GATGCTGTCCCAATCCAGTGG
Band lengths:
142-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)