HsaEX0038939 @ hg19
Exon Skipping
Gene
ENSG00000123600 | METTL8
Description
methyltransferase like 8 [Source:HGNC Symbol;Acc:25856]
Coordinates
chr2:172248553-172291312:-
Coord C1 exon
chr2:172291184-172291312
Coord A exon
chr2:172289536-172289729
Coord C2 exon
chr2:172248553-172248707
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTGCATGGGTTTTCACCAGGTA
3' ss Score
7.52
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
TAAAGGGAGGCCCCAGCGCGTTAAAACCGCATCCCCGCAGGAGGCTCGGCCGCCGCGCGCCCGCGGCCCTCCGTCCCGCCCCGGCCGGCTGGCGGTCACCTGGCACACCAGCGCCCGCAGGATGCCCAG
Seq A exon
GTACCCCAGGGTACTGCCTCCCACATCTCAGTGCAGGCTGGATGAATTGGCCTTGTCTGTGTTTCCTGTCTGAGTGTGAGTGTGAGTGCTCCCTGCGATGGAATGTCGTCGTGTCCAAGGGTTGGTTCCCACCTTGCACCCTGAGCTGAGGGGATAGGCTTCAGCCACCCTCGACCCTGAACTGGAATAATTAG
Seq C2 exon
GTACTGCTTAGGATGAATATGATTTGGAGAAATTCCATTTCTTGTCTAAGGCTAGGAAAGGTGCCACACAGATACCAAAGTGGTTACCACCCAGTGGCCCCTCTGGGATCAAGGATTTTAACTGACCCAGCCAAAGTTTTTGAACACAACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123600_MULTIEX1-1/9=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0033717=Gal-bind_lectin=PU(24.3=37.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCGTTAAAACCGCATC
R:
CAAAAACTTTGGCTGGGTCAGT
Band lengths:
258-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)