HsaEX0039143 @ hg19
Exon Skipping
Gene
ENSG00000008394 | MGST1
Description
microsomal glutathione S-transferase 1 [Source:HGNC Symbol;Acc:7061]
Coordinates
chr12:16510539-16536538:+
Coord C1 exon
chr12:16510539-16510633
Coord A exon
chr12:16520259-16520399
Coord C2 exon
chr12:16536441-16536538
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGAAAAAATGATTCTTTCAGGGC
3' ss Score
5.5
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GTTTTTGCCAATCCAGAAGACTGTGTAGCATTTGGCAAAGGAGAAAATGCCAAGAAGTATCTTCGAACAGATGACAGAGTAGAACGTGTACGCAG
Seq A exon
GGCACAGGAGATCTTAGGCCCAGAAAGGCAGATTCAGAAGAACCTACATGTAAATGAGACTGGAGTGGAAATGAGAATGGCAGGAAATGCATGGAAACAGACTTGTAACTGTCTCATGGCCTGGTCGTCCAAATCCCAGAG
Seq C2 exon
GATGGAGTGCAATGGCATGATCTCAGCTCACCGCAACCTCTGCCTCCCGGATTCAAGTGATTCTCCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000008394_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(30.3=93.8)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCAATCCAGAAGACTGTGT
R:
AATCCCAGCTACTCAAGAGGCT
Band lengths:
186-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)