HsaEX0039920 @ hg38
Exon Skipping
Gene
ENSG00000196199 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr13:19670236-19671289:+
Coord C1 exon
chr13:19670236-19670363
Coord A exon
chr13:19670840-19670964
Coord C2 exon
chr13:19671206-19671289
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTTTTTGAAGACA
3' ss Score
7.88
5' ss Seq
AATGCACGC
5' ss Score
-3.24
Exon sequences
Seq C1 exon
GCTCTGGCATCCTGCTGTTTATCTTCCATGCAAACTTTTTGGGTAAAGAAGTTATTGCTCGGCTCTGTGGACCGTGTAGTGTACAAGCTGTAGTTCTGAATGATAAATTTCAGCTTCCTGTTTTTCTG
Seq A exon
ACAGGGTCTCGCTCTGTTGTCCAGGCTGGAGTGCAGTGGCGCGGATTACAGCTCACTGGAGTCTTGACTTCCCAGGCACAAGCAATCCTCCCACCTCAGCCTCCTAACTACCTGGGACTAAAAAT
Seq C2 exon
GACAGTCATTTTGTTTACTCATTCAGCCCTGTTGCAGGTCCCAATAAACTCTTCATAAGGTTGACAGAAGCACCCTCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196199_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGCATCCTGCTGTTTA
R:
AGAGGGTGCTTCTGTCAACCT
Band lengths:
206-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development