HsaEX0040333 @ hg38
Exon Skipping
Gene
ENSG00000038945 | MSR1
Description
macrophage scavenger receptor 1 [Source:HGNC Symbol;Acc:HGNC:7376]
Coordinates
chr8:16495793-16511938:-
Coord C1 exon
chr8:16511838-16511938
Coord A exon
chr8:16497894-16497984
Coord C2 exon
chr8:16495793-16495946
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTGTTTTCAGTACAGATG
3' ss Score
4.42
5' ss Seq
GGCGTGAGC
5' ss Score
2.44
Exon sequences
Seq C1 exon
ATATTTACTTAACCCCTTATTTTTGCAGAACATATTGATGCTCTGAAAGATAACCCCAGAAGAGTATGAGGAGACATACACAGTCTACACAGGTCTGTAAG
Seq A exon
ATGGGGTTTCACCGTGTCAGCCAGGATGGTCCCGATCTCCTGACCTCGTGATCTGCCCGCCTCGGCCTCTCAAAGTGCTGGGATTACAGGC
Seq C2 exon
GTTGCCGCCATATATAAAGGAGTGCAAGAGTCCATAAAACTTACTCCCTCTGCTCTTGAAGGTGAACAGCACACTTTAGTAGCAAAAGAAAATTGGTAGTGAAAGCAAAACAAGGAAAGAAATCTCTCTGGGCCCTGCTTCTGTTTCTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000038945-'9-10,'9-9,10-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGTCTACACAGGTCTGT
R:
TTGAGAAACAGAAGCAGGGCC
Band lengths:
175-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development