HsaEX0040334 @ hg19
Exon Skipping
Gene
ENSG00000038945 | MSR1
Description
macrophage scavenger receptor 1 [Source:HGNC Symbol;Acc:7376]
Coordinates
chr8:16240788-16369419:-
Coord C1 exon
chr8:16369356-16369419
Coord A exon
chr8:16353302-16353455
Coord C2 exon
chr8:16240788-16240836
Length
154 bp
Sequences
Splice sites
3' ss Seq
TCTTTACTGTATTTACTCAGGTT
3' ss Score
7.41
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AACATATTGATGCTCTGAAAGATAACCCCAGAAGAGTATGAGGAGACATACACAGTCTACACAG
Seq A exon
GTTGCCGCCATATATAAAGGAGTGCAAGAGTCCATAAAACTTACTCCCTCTGCTCTTGAAGGTGAACAGCACACTTTAGTAGCAAAAGAAAATTGGTAGTGAAAGCAAAACAAGGAAAGAAATCTCTCTGGGCCCTGCTTCTGTTTCTCAAAAG
Seq C2 exon
ATTGCCTGTTTTACTTCTCACCATTGATTTATGTTGCCAAAACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000038945_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGATGCTCTGAAAGATAACCCCA
R:
TGGCAACATAAATCAATGGTGAGA
Band lengths:
98-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)