HsaEX0040402 @ hg19
Exon Skipping
Gene
ENSG00000057935 | MTA3
Description
metastasis associated 1 family, member 3 [Source:HGNC Symbol;Acc:23784]
Coordinates
chr2:42909541-42922979:+
Coord C1 exon
chr2:42909541-42909729
Coord A exon
chr2:42913074-42913233
Coord C2 exon
chr2:42922905-42922979
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTCCTATAATGCCATCACAGGTA
3' ss Score
4.74
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TTTCACGCTATGGATACATTGTATAGACACAGCTATGATTTGAGCAGTGCCATTAGTGTCTTAGTACCACTCGGAGGACCTGTTTTATGCAGAGATGAAATGGAGGAATGGTCAGCCTCTGAAGCTAGCTTATTTGAAGAGGCACTGGAAAAATATGGCAAAGACTTCAATGACATACGGCAAGATTTT
Seq A exon
GTACATGATGTTGTTGGGGCAATGTATTTCTTATGACATGAAGTTTTAAGAAGTGTCCTTTTAGAAACTGTCAGGTAGTGTATGCAACAAAAAGTCTCCTGGGCCTCCTCTGCTTAAATACTAGACCTTTACCTGAGCACTGAGCAACTGTGTCATAATG
Seq C2 exon
CTTCCTTGGAAATCATTGACTAGCATCATTGAATATTATTACATGTGGAAAACTACTGACAGATATGTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000057935_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.057 A=0.000 C2=0.149
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
PF0024926=Myb_DNA-binding=PD(3.1=8.3)
C2:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGACACAGCTATGATTTGAGCAGT
R:
CTGTTGCACATATCTGTCAGTAGT
Band lengths:
242-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)