HsaEX0040774 @ hg38
Exon Skipping
Gene
ENSG00000205592 | MUC19
Description
mucin 19, oligomeric [Source:HGNC Symbol;Acc:HGNC:14362]
Coordinates
chr12:40547135-40547825:+
Coord C1 exon
chr12:40547135-40547182
Coord A exon
chr12:40547477-40547622
Coord C2 exon
chr12:40547772-40547825
Length
146 bp
Sequences
Splice sites
3' ss Seq
GCATAAACCTGTAATTCCAGCTA
3' ss Score
1.5
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGCTACCACTAGAGGGTCAGCAAAGCAAGGAACTAGAAGCACAATAG
Seq A exon
CTATTCAGGAGGCTGAGGCAGGAGGATCACTTGAACCTGGATGGAGGTTGCAGTGAGAGATAGCACCATTGCACTCCAGCCTGGGTGACAGAGAGAGACTAGGGTAGCTTCTGGCAACACATCTAAACCTGGGAGTTCAAATACAG
Seq C2 exon
AAGCTACGACGTCCTTTAGAGGCACTGGGACCACAGGAAGTGGAATGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205592_CASSETTE9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCACTAGAGGGTCAGCA
R:
CTGTATTCATTCCACTTCCTGTG
Band lengths:
100-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development