HsaEX0040946 @ hg19
Exon Skipping
Gene
ENSG00000133026 | MYH10
Description
myosin, heavy chain 10, non-muscle [Source:HGNC Symbol;Acc:7568]
Coordinates
chr17:8526220-8534079:-
Coord C1 exon
chr17:8533972-8534079
Coord A exon
chr17:8526742-8526815
Coord C2 exon
chr17:8526220-8526595
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTTTGCCCTCAGTAA
3' ss Score
9.28
5' ss Seq
TCGGTTAGT
5' ss Score
5.63
Exon sequences
Seq C1 exon
AGCAGTGCTAAAGGAGCCCGGCGGAGGCAGCGGTGGGTTTGGGACTGAGGCGCTGGATCTGTGGTCGCGGCTGGGGACGTGCGCCCGCGCCACCATCTTCGGCTGAAG
Seq A exon
TAACTGAGGGCAAACCCATCAGACAACCAGAGCCATAATTTGTGGTCACCGCTGAAATTTACCTTGGAAACTCG
Seq C2 exon
AGGCAATTGCTTTTGGATCGTTCCATTTACAATGGCGCAGAGAACTGGACTCGAGGATCCAGAGAGGTATCTCTTTGTGGACAGGGCTGTCATCTACAACCCTGCCACTCAAGCTGATTGGACAGCTAAAAAGCTAGTGTGGATTCCATCAGAACGCCATGGTTTTGAGGCAGCTAGTATCAAAGAAGAACGGGGAGATGAAGTTATGGTGGAGTTGGCAGAGAATGGAAAGAAAGCAATGGTCAACAAAGATGATATTCAGAAGATGAACCCACCTAAGTTTTCCAAGGTGGAGGATATGGCAGAATTGACATGCTTGAATGAAGCTTCCGTTTTACATAATCTGAAGGATCGCTACTATTCAGGACTAATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.061
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=WD(100=37.4),PF0006316=Myosin_head=PU(27.5=24.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGAGGCGCTGGATCTGT
R:
GGCAGGGTTGTAGATGACAGC
Band lengths:
172-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)