HsaEX0040971 @ hg38
Exon Skipping
Gene
ENSG00000092054 | MYH7
Description
myosin heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:7577]
Coordinates
chr14:23433532-23435718:-
Coord C1 exon
chr14:23435620-23435718
Coord A exon
chr14:23434194-23434249
Coord C2 exon
chr14:23433532-23433740
Length
56 bp
Sequences
Splice sites
3' ss Seq
AGCCTCTTCCCTCTCTCCAGGTC
3' ss Score
10.94
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGGGGTGGGGGTGCCCTGCTGCCCCATATATACAGCCCCTGAGACCAGGTCTGGCTCCACAGCTCTGTCCTGCTCTGTGTCTTTCCCTGCTGCTCTCAG
Seq A exon
GTCCCCTGCAGGCCTTGGCCCCTTTCCTCATCTGTAGACACACTTGAGTAGCCCAG
Seq C2 exon
GCACAGCCATGGGAGATTCGGAGATGGCAGTCTTTGGGGCTGCCGCCCCCTACCTGCGCAAGTCAGAGAAGGAGCGGCTAGAAGCGCAGACCAGGCCTTTTGACCTCAAGAAGGATGTCTTCGTGCCTGATGACAAACAGGAGTTTGTCAAGGCCAAGATCGTGTCTCGAGAGGGTGGCAAAGTCACTGCCGAGACCGAGTATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.060
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=49.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTCTTTCCCTGCTGCTC
R:
GAGGTCAAAAGGCCTGGTCTG
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development