HsaEX0041071 @ hg19
Exon Skipping
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34881059-34883530:-
Coord C1 exon
chr17:34883382-34883530
Coord A exon
chr17:34883195-34883287
Coord C2 exon
chr17:34881059-34881172
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTTATTCATCTATTCACCAGCAA
3' ss Score
3.57
5' ss Seq
AAGGTGCAA
5' ss Score
2.22
Exon sequences
Seq C1 exon
TCCTGAGGTGCCTGCAGGCCCGGTACATGGCAGACACATTCTACACCAATGCTGGCTGCACCCTGGTAGCCTTGAACCCCTTCAAGCCTGTTCCTCAGCTCTACTCGCCCGAGCTAATGAGAGAGTACCATGCTGCGCCTCAGCCCCAG
Seq A exon
CAATGTGGTCATTCAGAGTCTGCTAGTGCCACGGCCTGCCCAATAGGAGCTGGCAGAATTTTGAACCATGAAGAACTGACTACAGGACAGAAG
Seq C2 exon
AAACTGAAGCCCCATGTGTTCACTGTGGGTGAACAGACCTACAGGAATGTCAAGAGCCTGATTGAACCAGTCAACCAGTCTATTGTTGTCAGTGGAGAGAGTGGTGCTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140-'7-11,'7-9,8-11
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.194 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.0=100)
A:
PF0006316=Myosin_head=FE(6.9=100)
C2:
PF0006316=Myosin_head=FE(24.7=100),PF131481=DUF3987=PU(42.6=76.3),PF118703=DUF3390=PU(30.2=50.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCCTGTTCCTCAGCTCT
R:
TTTCCAGCACCACTCTCTCCA
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)