HsaEX0041072 @ hg38
Exon Skipping
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36532527-36534104:-
Coord C1 exon
chr17:36533953-36534104
Coord A exon
chr17:36533160-36533423
Coord C2 exon
chr17:36532527-36532681
Length
264 bp
Sequences
Splice sites
3' ss Seq
CACTTAACCATTCTTCAAAGATT
3' ss Score
4.03
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TGTTCACACCCTTTCCAGAAATTCTTGGCTGGTAACCGCGAAACCGACTGGAGCAGGAGCTGGGAGAACTGGAGAAAACTGCTCTAATCTCACTTGACTCCAGCTAGGAGCTGATGCTGCATCGTAATAACATTTGCAGAGCGCTTTCACAG
Seq A exon
ATTGGCTTAGGCCCAGCCTCACAACACCCCACCTCCCAGATGGATTCATCTCCCTGAAATCCTCACCTTCTTGAAGTTGACACTGGACCGTTCACCTGATTAGCGCTCCCAAATGGATCATCAACCCTTAGTCGTAGTGCTAACAGTGTTTATCCTCTGAGTGAATACTCAGATTCGTACTTTGTGTGGTGCTGTCAAACCATGACCTCATTGACCTTCACAACCACTCCTTATGAGGCAGATTTAACTGTCCCCATTTTCAAG
Seq C2 exon
GCGCTGGAGTGACTTGTCTGAGATTCCTCCAGAACTGAGCCCTTTGTTGGAACCATACCCCAGCCCATGGTCCCATGACTAGGTGGATAGTACTCCTTGTACCTCCTGCAACCCAGAACCCTGGCTGACCACTTTGAAGGAGGATGCTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259-'12-18,'12-17,15-18=AN
Average complexity
A_S
Mappability confidence:
89%=100=75%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.923
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006316=Myosin_head=PU(1.1=50.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCACACCCTTTCCAGAAA
R:
CCTCCTTCAAAGTGGTCAGCC
Band lengths:
295-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development