HsaEX0041082 @ hg19
Exon Skipping
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34883895-34888511:-
Coord C1 exon
chr17:34888357-34888511
Coord A exon
chr17:34886807-34886898
Coord C2 exon
chr17:34883895-34884033
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTATTTATTTTTATTTTAGAGA
3' ss Score
8.23
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GCGCTGGAGTGACTTGTCTGAGATTCCTCCAGAACTGAGCCCTTTGTTGGAACCATACCCCAGCCCATGGTCCCATGACTAGGTGGATAGTACTCCTTGTACCTCCTGCAACCCAGAACCCTGGCTGACCACTTTGAAGGAGGATGCTCCAGCAG
Seq A exon
AGATGGAGTCTCACTCTGTAGACAAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCGTCTGCCTCAGCCTCCCAAAGTGCTTTTACAGGG
Seq C2 exon
GTCAATGGCCACAATCCGGGGTCTGATGGCCAAGCCAGGGAGTACCTCAGAGAAGACCTGCAGGAGTTCCTGGGTGGGGAGGTCCTGCTGTACAAACTGGATGACCTCACCAGGGTGAATCCTGTGACACTAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140_MULTIEX2-1/13=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.000 C2=0.281
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(1.1=50.0)
A:
NO
C2:
PF0006316=Myosin_head=PU(11.2=29.8)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCTCCTGCAACCCAGAA
R:
CCCTGGTGAGGTCATCCAGTT
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)