HsaEX0041083 @ hg19
Exon Skipping
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34867204-34869348:-
Coord C1 exon
chr17:34869272-34869348
Coord A exon
chr17:34868501-34868622
Coord C2 exon
chr17:34867204-34867294
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCATCTTCCTCACCCTCTAGAGC
3' ss Score
9.71
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGGATTGTTTTGAGGTGACCAGAGAGGCCATGCTCCATTTGGGCATTGACACCCCTACCCAGAACAACATCTTTAAG
Seq A exon
AGCAGCAGGAGGGGATAGATAGGATGGCCTGGCAGTCGAGAAAGGGAGGCCACTTCAGGGAGGTAGCAATGCAGTGGAAAGTGACCCTCACCTCCAGATGGGGGCTGCTCAGACACTGCCAG
Seq C2 exon
GTCCTAGCTGGACTGCTGCACCTTGGCAATATCCAGTTTGCTGCCTCCGAGGATGAAGCCCAGCCCTGCCAGCCGATGGATGATGCCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140_MULTIEX2-10/13=9-11
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.800 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.1=100)
A:
NO
C2:
PF0006316=Myosin_head=FE(7.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTGAGGTGACCAGAGAGGC
R:
ACTTGGCATCATCCATCGGC
Band lengths:
162-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)