HsaEX0041190 @ hg38
Exon Skipping
Gene
ENSG00000197535 | MYO5A
Description
myosin VA [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr15:52330353-52336556:-
Coord C1 exon
chr15:52336463-52336556
Coord A exon
chr15:52331699-52331836
Coord C2 exon
chr15:52330353-52330499
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACAATCTGACCACTCTTTAGATA
3' ss Score
4.32
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GATTTGATGGAACAACTTGAAAAACAGGATAAGACGGTCCGTAAACTGAAAAAACAACTGAAAGTATTTGCCAAAAAAATTGGCGAACTAGAAG
Seq A exon
ATATCATAGTGTTGCTGGATGGTGGTGACTTCACCTAAACCAGATTTTCAGCGCTGATAGTCCCAGTGTGTGCTGCTGCAGCATGAGGTGGACGGTGTGTCACCAGGCTCCATGCCACATAAGCAAGAGCACTGGCAG
Seq C2 exon
TGGGCCAGATGGAGAACATATCCCCAGGACAGATCATTGATGAACCCATCCGACCAGTCAACATTCCCAGGAAAGAAAAGGATTTCCAAGGGATGCTGGAATACAAGAAGGAGGATGAGCAAAAACTTGTTAAGAACCTGATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000399231fB4501
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAACTTGAAAAACAGGAT
R:
CCAGAATCAGGTTCTTAACAAGTT
Band lengths:
234-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development