HsaEX0042156 @ hg19
Exon Skipping
Gene
ENSG00000204623 | NCRNA00171
Description
ZNRD1 antisense RNA 1 (non-protein coding) [Source:HGNC Symbol;Acc:13924]
Coordinates
chr6:29979876-30025967:-
Coord C1 exon
chr6:30025892-30025967
Coord A exon
chr6:30002685-30002887
Coord C2 exon
chr6:29979876-29989538
Length
203 bp
Sequences
Splice sites
3' ss Seq
TACTTTCCATGTTCCCTTAGGAA
3' ss Score
10.27
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
ATTGGCCTGGGGTACATCATCTAAAGATCCTAGGATTGCTGCAGGTCAGCAGTCTCCACTGGAAAAAAAGATCTTG
Seq A exon
GAACACAGATGAAATGAGAAACAAAAACGATGGAGAAAACCAAAAAAGGGGACACATGGGATCCAGGCAATAGGAGAGCCAGCATAAGAGAGAGCCAGAGGGATGCCCAGGATGAGGTGAAGACGATCTTGGAAATCAGCCCAGATGTGCATGCACCAGTCCACGTGTGGCAGGACCAAGGGAAGTGTCTTCACAAAGATGAG
Seq C2 exon
GCTTTGATTTGTTGGAGAAACTGTTACCAGAAAAACAGGTCCCGATCCCGACCCCAAAAGAGTATTCTTGGATCTTGCACAGGAAGGAATTAAAGGTGAGTCACAGAGTGCAGTGAGAAGGAGATAGTTTATTGAAAGTTACTCAGATACAGAGTAGGTGTCCTCAGAAAGCAAAAGGAAGAATGCACCATCTTTGTTGTAAACTCTTCTAATGTAGGGGTTTAATCTACATAAAAGCTAAGTTAAATGTCTATGTGTGGGTGCTCTGACAGCATGACAAAATTTAGGACCTATTGATTTAAAGAAAGTTATCCTTGGCATTTTAGTTAGTATATCAAAGCATGACTATAATAATCTTAAAAGCATATATTATAATGTGACGTCAGGACATGTGGACATTCTGTTGTCTGTCATAGGCGTTTGTTCTTGCAGGCATTATTAAGTTGTTTAATCAGCTGTAAACCTCTTATGACCATGGGTTGTGACTGGCAAGGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204623_MULTIEX1-3/10=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTCAGCAGTCTCCACT
R:
TCAGAGCACCCACACATAGACA
Band lengths:
305-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)