HsaEX0042160 @ hg19
Exon Skipping
Gene
ENSG00000204623 | NCRNA00171
Description
ZNRD1 antisense RNA 1 (non-protein coding) [Source:HGNC Symbol;Acc:13924]
Coordinates
chr6:29975301-29977608:-
Coord C1 exon
chr6:29977503-29977608
Coord A exon
chr6:29976670-29976948
Coord C2 exon
chr6:29975301-29975419
Length
279 bp
Sequences
Splice sites
3' ss Seq
TCCTTCATACTTACTTGCAGCCT
3' ss Score
7.91
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGAAGTAAGAAGTTACAGCTCAGTGCACCATGAAGTTGAGACAGAGATGGAGACATCCCAGCACCACTTCTCTGGAACAGGAAAGGTGATCGGGGAAGGAATGTAG
Seq A exon
CCTGAGAGTAGCTCCCTCCTTTTCTATCTGCGGGAAGAAAACGTCCTGTGAGAGGCCAGGAAGGTAGCAGGGCCATGAGGTCCTAGAGGAACCTCCTAGTCTTGGAACCTTGAGAAGTTTCCAGAAATGTGTGACTGCAAACCAAGGGCAGGATCAGGAAAAACAAGGAAAGCAGATGTGGGTCCTGGACCAACTGCCCTCCTAAGGTCTGTCCTCAGCAGGGACCTTCCCCTGACCTGTGATTACTGGGGTCAGATCCCCATCACTACAATCATCAAG
Seq C2 exon
CCCGGGAGATCTACAGGAGATCGAGCAGGCTCCCCATGGCCCCTGGTACCCGCGCGCTGCAGCGTCTCCTTCCCGTTCTCCAGGTGTCTGCGGAGCCACTCCATGCAGGTGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204623_MULTIEX1-7/10=6-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTTACAGCTCAGTGCACC
R:
GGCACCTGCATGGAGTGG
Band lengths:
212-491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)