HsaEX0042210 @ hg19
Exon Skipping
Gene
ENSG00000166579 | NDEL1
Description
nudE nuclear distribution E homolog (A. nidulans)-like 1 [Source:HGNC Symbol;Acc:17620]
Coordinates
chr17:8339179-8347675:+
Coord C1 exon
chr17:8339179-8339363
Coord A exon
chr17:8347245-8347494
Coord C2 exon
chr17:8347578-8347675
Length
250 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTCCCGATTCGCAGAAG
3' ss Score
7.53
5' ss Seq
GCAGTTCAG
5' ss Score
-18.14
Exon sequences
Seq C1 exon
AGAATGGCCTCGGACACCCAGGCAGTCCCTGACGTGTCGGGGAGGAGCCGGGCGCGGAGGTACGCTGAGTGGAGCTCGGGGCTGCGTAGGGGAGCTGAGCCGAGCGGCTGGGCGGGCCTGGCCGGGCCGGCGGAGGGGAGACGTCGGTTGAGCGGCGGCGAACATGCGCTTTTGACACATTGGAG
Seq A exon
AAGACCACGTGGCCTTAAACCAACTGCTGCAACTCTGTGTGCAGGATGATTCTGTGGGCCCAAGTCACCCAGCGCCTATGCTGCAACCAAAAGTGCCTCCTGTCGCTTTGTATCAAAGGACCTTTGTCATGATCTCATTCACAATATTGGTGGTCCCTGAGAGTGGAGCAGTGGAGTGATTGACGTGCCTGAGTTTGAAGAGAGTTAACCACTGGAATCTCTCATGTTTTATTCCCTCCAAAATGCTGCA
Seq C2 exon
GCTTTCTTGATCATGGATGGTGAAGATATACCAGATTTTTCAAGTTTAAAGGAGGAAACTGCTTATTGGAAGGAACTTTCCTTGAAGTATAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166579-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=0.000 C2=0.132
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF079267=TPR_MLP1_2=PU(34.2=93.1),PF152721=BBP1_C=PU(12.1=58.6),PF102414=KxDL=PU(10.0=24.1),PF104734=CENP-F_leu_zip=PU(7.2=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGGCCTCGGACACCC
R:
CTTTGCTTATACTTCAAGGAAAGTTC
Band lengths:
283-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)