HsaEX0043337 @ hg19
Exon Skipping
Gene
ENSG00000147140 | NONO
Description
non-POU domain containing, octamer-binding [Source:HGNC Symbol;Acc:7871]
Coordinates
chrX:70503042-70510641:+
Coord C1 exon
chrX:70503042-70503571
Coord A exon
chrX:70504834-70504947
Coord C2 exon
chrX:70510479-70510641
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTGCTGTGTTCTCTTTTCAGAGG
3' ss Score
11.32
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCTACGCGCGCATTTTCTCCCCTTCCTCTCCCTCTTTCCACTTTCCTCTCCCTTTTTCTCCTCTCCTTTCCCCCTCCCACCACTTGGTCTTTCAGTCTTTCAGTCAGTTCGTTTAGGTCTCTCCTTCCGACCCCCACCCCCAGCTCCTCTCCCTTTCCTTTTCCCCCTCCCCCTTTCCTTTCCCGTCTCACGCGCCAGGCCGCTTGCACATGCGCATTAGGTACAAAGCCTCGCTCTTTGTCCCCATCTGTCGTTCACACGAACTCAAGCCTTTGGCATTCGGCAGCCAATAGAATCTAAGAAATGGCGGAAAAATGATTCCGCCTCGGGAGCTAAACCTTGATTGGCAGTTTAGCTAACCAATCGAGAACGCCATTTTGTACCCCTTGGCAGGCACCGAGCTCCGTCGTCTCGTTTCCGGCGGTCGCGCGCTCTTTTCTCGGGACGGGAGAGGCCGTGTAGCGTCGCCGTTACTCCGAGGAGATACCAGTCGGTAGAGG
Seq A exon
AGGCCCAGTATTTAGGCGACAGTGAATTTATTACTCTGAAGAGGGTTCTGCACATATTTCCAAATTATATTGGTGGTCATCAGAAGTAGGTGATAGGAAGAAATACTTCTCAAG
Seq C2 exon
GGTGCAAAAATGCAGAGTAATAAAACTTTTAACTTGGAGAAGCAAAACCATACTCCAAGAAAGCATCATCAACATCACCACCAGCAGCAGCACCACCAGCAGCAACAGCAGCAGCCGCCACCACCGCCAATACCTGCAAATGGGCAACAGGCCAGCAGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147140-'0-5,'0-4,5-5
Average complexity
C2
Mappability confidence:
89%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF053086=Mito_fiss_reg=PU(63.0=98.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCCGTCGTCTCGTTTC
R:
CCTGTTGCCCATTTGCAGGTA
Band lengths:
253-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)