HsaEX0043380 @ hg19
Exon Skipping
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficker [Source:HGNC Symbol;Acc:20203]
Coordinates
chr2:169699502-169707692:+
Coord C1 exon
chr2:169699502-169699627
Coord A exon
chr2:169707346-169707516
Coord C2 exon
chr2:169707594-169707692
Length
171 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCCTCATAAACTTAGGTA
3' ss Score
7.37
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTCCTCAATAAACTGACAAAATCAACTGAAAAGTTGGAAAAGGAAGATGAAAATTACTACCAAAAAAACATGGCGGGTTATTCTACCAGACTGAAATGGGAAAACACACTAGAGAACTGCTACCAG
Seq A exon
GTAACCCACAGCATCTGCCTATATGCCTTTTGGGTCAAAAGAGCCTGGGGAAAGTGTGTGAGTGATTTAAGATACCAAGACACATTCCTTCCTGGAAATCTCCCTCCACTATGGTTTGGATATGACATAGTCAAGAGGCTAATCATGAGACTTTGTTCAGTCTGTCTTCAG
Seq C2 exon
AGCATTCTGGAGCTGGAGAAGGAAAGAATTCAACTTTTATGCAATAACTTAAACCAGTACAGCCAACATATTTCTCTTTTTGGCCAAACCCTGACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(41.1=54.8)
A:
NO
C2:
PF087426=C8=PD(55.4=93.9)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCAATAAACTGACAAAATCAACT
R:
TCAGGGTTTGGCCAAAAAGAGA
Band lengths:
219-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)