HsaEX0043384 @ hg19
Exon Skipping
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficker [Source:HGNC Symbol;Acc:20203]
Coordinates
chr2:169711862-169713288:+
Coord C1 exon
chr2:169711862-169711970
Coord A exon
chr2:169712396-169712720
Coord C2 exon
chr2:169713200-169713288
Length
325 bp
Sequences
Splice sites
3' ss Seq
AAATTAAATTCTGTACGTAGAAG
3' ss Score
4.05
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GAAGAAGATCCTAACAGTGCAATGGATAAAGAGAGACGAAAGTCTTTACTAAAACCAAAATTATTGAGACTGCAGAGAGACATTGAAAAAGCCTCAAAAGACAAGGAAG
Seq A exon
AAGTTAGGCATGTCAGACTGTGAAGCAGCTCTAAAGCAACAAGGATGACAAAAACGACTCCACATTTGTGACTCTGATGTCTACCTAGTAACTTGTTTTATATGGACCACGATAACTCATTGCAATGGAATACTAGAGAGCAAATTCAAGATAGAAAACATTTAGTGATGTGAATACCATAACGAGGAAGAAGCCAACGTTGGGTAACTGTTAGCAATTGCTAGAATGGGTCGACTGAAAGAATTTCAAAATCTCATCTGGAAAAATAACAATCAAGATGCTTTAAGCACCAGCACTTCTCAAATTTCATTAAGTGAAGAGAAAG
Seq C2 exon
GCCTGGAACGAATGCTTAAAACGTACTCCAGCACCTCCTCCTTCTCTGATGCAAAGAGCCAGAAAGACACAGCAGCGTTAATGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072_MULTIEX2-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.571 C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGATCCTAACAGTGCAATGG
R:
CTCATCCATTAACGCTGCTGTG
Band lengths:
198-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)