HsaEX0043444 @ hg19
Exon Skipping
Gene
ENSG00000188747 | NOXA1
Description
NADPH oxidase activator 1 [Source:HGNC Symbol;Acc:10668]
Coordinates
chr9:140322485-140323468:+
Coord C1 exon
chr9:140322485-140322593
Coord A exon
chr9:140322893-140323068
Coord C2 exon
chr9:140323334-140323468
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACCCTCCACTGTGCCCCCAGCCC
3' ss Score
8.21
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GTTCCAGGAGGCTCTGTCTGACTTCTGGCTGGCCCTGGAGCAGCTGAGGGGCCACGCTGCCATCGACTACACGCAGCTGGGCCTGCGGTTCAAGCTGCAAGCCTGGGAG
Seq A exon
CCCTTTCCTGGCTGCCTGGAACGTGTTGGCACCGAAGGAGGGGTGCTGAGAGGCCCCCCCACCAGACCCCGGAAATGCATCGCCCTGAAGCCTTCTGGGAATAGCATTGTCTTTTAGGACAAAAAGATGGAAGGGAAAGCCCACTGGTGTGGGTCTGGAGTCAGGGTTAAAGCCAG
Seq C2 exon
GTGCTACACAATGTGGCGTCGGCACAGTGCCAGCTGGGGCTCTGGACAGAGGCGGCCAGCAGCCTAAGGGAGGCCATGTCCAAGTGGCCGGAGGGGTCCCTGAATGGCCTGGACTCAGCCCTGGACCAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188747-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(23.5=43.2)
A:
NO
C2:
PF131761=TPR_7=WD(100=75.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGGAGGCTCTGTCTGAC
R:
TGCACTTGGTCCAGGGCT
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)