HsaEX0043604 @ hg19
Exon Skipping
Gene
ENSG00000168743 | NPNT
Description
nephronectin [Source:HGNC Symbol;Acc:27405]
Coordinates
chr4:106823851-106833395:+
Coord C1 exon
chr4:106823851-106823952
Coord A exon
chr4:106826459-106826526
Coord C2 exon
chr4:106833345-106833395
Length
68 bp
Sequences
Splice sites
3' ss Seq
CTTAAATTGTCTCCTTTTAGAAA
3' ss Score
8.77
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTGTTTAAGAACATCATGTACCTTTGGGTAACTTCAAGTGGTCTTGGAATGCAGATTCCAAAGTAAGATCAGCGTTGAAGAATCTTGACCTTTTCAAACAG
Seq A exon
AAAAGTAAGAAATGCATGATTAGGTGAAAAATTAAAAGACACATACTAAGAGCAAGACAGCAGTGAAG
Seq C2 exon
CTTTCTACGTCTTAAGGCAGAGAATAGCCAGGATAAGGTGCCAGCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168743-'5-16,'5-10,6-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTAAGAACATCATGTACCTTTGG
R:
CTTTGAGCTGGCACCTTATCCT
Band lengths:
151-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)