HsaEX0044512 @ hg19
Exon Skipping
Gene
ENSG00000171102 | OBP2B
Description
odorant binding protein 2B [Source:HGNC Symbol;Acc:23381]
Coordinates
chr9:136082613-136083590:-
Coord C1 exon
chr9:136083520-136083590
Coord A exon
chr9:136083227-136083332
Coord C2 exon
chr9:136082613-136082723
Length
106 bp
Sequences
Splice sites
3' ss Seq
TCAGACACCGGGTGTGACAGGCT
3' ss Score
0.11
5' ss Seq
TAGGTACGG
5' ss Score
7.82
Exon sequences
Seq C1 exon
GAGGGAGGATAGGTGCATCCAGAAGAAAATCCTGATGCGGAAGACGGAGGAGCCTGGCAAATACAGCGCCT
Seq A exon
GCTTGTCCGCAGTCGAGATGGACCAGATCACGCCTGCCCTCTGGGAGGCCCTAGCCATTGACACATTGAGGAAGCTGAGGATTGGGACAAGGAGGCCAAGGATTAG
Seq C2 exon
ATGGGGGCAGGAAGCTCATGTACCTGCAGGAGCTGCCCAGGAGGGACCACTACATCTTTTACTGCAAAGACCAGCACCATGGGGGCCTGCTCCACATGGGAAAGCTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171102_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.465
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.3=100)
A:
PF0006118=Lipocalin=PD(11.7=25.0)
C2:
PF0006118=Lipocalin=FE(26.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAGGATAGGTGCATCCA
R:
AAGCTTTCCCATGTGGAGCAG
Band lengths:
178-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)