HsaEX0044597 @ hg19
Exon Skipping
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:8114]
Coordinates
chr9:131221846-131222945:+
Coord C1 exon
chr9:131221846-131221936
Coord A exon
chr9:131222437-131222578
Coord C2 exon
chr9:131222792-131222945
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACGCCAATCTGCATGCCCAGTTG
3' ss Score
2.72
5' ss Seq
CGGGTGGGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGAGAGCACCTTGTGGCGCACCCAGTGTAACTGTGACG
Seq A exon
TTGAGATCACTGTGTAGAAGGATCCGCCTGCTTTCCGCTGTGCTTCACTAAATCCAAGGAGGAGCTGTGCATTCCAGCAGGTTTAGAGGAGATCCAGCCCTAAGAACCCTGGGGCCGGCGTCTGGGATCTGTTCTGGAACGG
Seq C2 exon
ATCAACCATTTTTGTGTTGTCCTCCCCCACCTGCCAGAAGCCAACCATGAAGGACCGCTCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACCCCTGTCCACGTCCACATAAAAAAACTCCCGAAACCATCAGCGACCAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811_MULTIEX1-1/5=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=0.000 C2=0.863
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF041569=IncA=PU(14.0=75.0),PF134761=AAA_23=PU(3.8=16.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCATCGTGTGGGAAGAAC
R:
GCTGCTGGTCGCTGATGG
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)