HsaEX0044608 @ hg19
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:29225]
Coordinates
chr1:86826109-86836836:-
Coord C1 exon
chr1:86836701-86836836
Coord A exon
chr1:86834319-86834405
Coord C2 exon
chr1:86826109-86826219
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTGTATTGTCTTTAGCTT
3' ss Score
7.49
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCAAATCATTAATCTTTTGGAAGATCTGAAGAAAATGGAAGACCATGGAAAAAATTCATGTGAAGAAATTCTTAGAAAAGTTCACTCAATTGAATATGAAAATGAAACTCTGAATCTTGAGAATACAAAATTAAAG
Seq A exon
CTTAGATTCCCATGTAGAATTACTGAGTCAAAGAATATGAACATTTTGATTGTTCTTGATATGCTTTGCTACATTTCTTCTGAAAAG
Seq C2 exon
ACTACACTTGCTGCTTTGAAGGATGAAGTTGTATCTGTTGAAAATGAACTCTCAGAATTGCAAGAAGTAGAAAAAAAACAGAAAACCCTTATTGAAATGTATAAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417_MULTIEX2-10/10=9-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(14.5=100),PF115593=ADIP=FE(32.8=100),PF131661=AAA_13=FE(22.0=100)
A:
NO
C2:
PF0003816=Filament=FE(11.6=100),PF115593=ADIP=FE(26.3=100),PF131661=AAA_13=FE(17.6=100)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGATCTGAAGAAAATGGAAGACC
R:
TGCAATTCTGAGAGTTCATTTTCA
Band lengths:
180-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)