HsaEX0044713 @ hg19

Exon Skipping

Gene

ENSG00000130558 | OLFM1

Description

olfactomedin 1 [Source:HGNC Symbol;Acc:17187]

Coordinates

chr9:137982041-137987865:+

Coord C1 exon

chr9:137982041-137982190

Coord A exon

chr9:137987329-137987487

Coord C2 exon

chr9:137987710-137987865

Length

159 bp

Sequences

Splice sites

3' ss Seq

CTAATGTTGTCCTGCAACAGAAA

3' ss Score

5.23

5' ss Seq

CAGGTTGGC

5' ss Score

5.52

Exon sequences

Seq C1 exon

GTGCTGCCCACCAACCCTGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGCGAGGGCAGGTGTATCTGCACAGTGGTCGCTCCACAGCAGACCATGTGTTCACGGGATGCCCGCACAAAACAGCTGAGGCAGCTACTGGAGAAG

Seq A exon

AAAGACTAGGAACAATCCCCACCCACCACTACCAAAAAAAAAAAAAAAAGAGAGAGAGAGAGATCAAGAGAAATCACCCAGCCTGTGCCTGGAGCTACAGCGAATAACGGAACTTGAGTCTCCTACACCCCTGATTTGCATCCCTGATGATAAGAACAG

Seq C2 exon

GTGCAGAACATGTCTCAATCCATAGAGGTCTTGGACAGGCGGACCCAGAGAGACTTGCAGTACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCCAAGTTCAAACAGGTGGAGGAGAGTCATAAGCAACACCTGGCCAGGCAGTTTAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000130558-'6-8,'6-7,7-8

Average complexity

S

Mappability confidence:

88%=100=75%

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.180 A=0.000 C2=0.266

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=PU(22.9=94.1),PF101864=Atg14=PU(12.6=94.1),PF0154011=Lipoprotein_7=PU(11.8=82.4),PF100464=BLOC1_2=PU(23.6=76.5),PF0149614=V_ATPase_I=PU(11.3=82.4),PF041569=IncA=PU(11.9=88.2),PF131661=AAA_13=PU(11.0=82.4),PF045827=Reo_sigmaC=PU(11.7=88.2),PF060097=Laminin_II=PU(15.9=76.5)

A:

PF123083=Noelin-1=PD(2.0=33.3)

C2:

PF123083=Noelin-1=FE(72.9=100),PF101864=Atg14=FE(40.2=100),PF0154011=Lipoprotein_7=FE(42.9=100),PF100464=BLOC1_2=PD(72.7=76.9),PF0149614=V_ATPase_I=FE(41.1=100),PF041569=IncA=FE(40.5=100),PF131661=AAA_13=FE(40.2=100),PF045827=Reo_sigmaC=FE(39.8=100),PF060097=Laminin_II=FE(62.2=100),PF138741=Nup54=PU(44.5=94.2),PF055317=NPV_P10=PU(48.0=92.3),PF045137=Baculo_PEP_C=PU(44.5=94.2),PF0080420=Syntaxin=PU(38.8=73.1),PF100464=BLOC1_2=PU(58.1=69.2),PF078897=DUF1664=PU(38.2=65.4),PF093215=DUF1978=PU(32.1=51.9)

Main Inclusion Isoform:

ENSP00000252854f4392A