HsaEX0044925 @ hg19
Exon Skipping
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:16388]
Coordinates
chr2:179081498-179149848:+
Coord C1 exon
chr2:179081498-179081581
Coord A exon
chr2:179095153-179095240
Coord C2 exon
chr2:179149654-179149848
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTGATTTTATTATTTCATAGTCT
3' ss Score
7.09
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAATGCATGGCCTGAGTCTCGTCATGAGGAGACATCAGATGGATTCAAATTGAGGGTGACCTGAGTCATCTGAGAGAATAAAAG
Seq A exon
TCTCTGATCTTCACTGGCATACTGGGTTCCTCGGAAAAGTGGAAGACATGAAGTATGGATGTATATAATACCCGAGGAAGTCTCAAAG
Seq C2 exon
GTTCTGCCACTTGCTGGGAAAACAGCAACAGAAGGATATTAAGGAGCCACCCCTATAATTTACCCAGATAGCCCCAGCAAGGTCAAAGACATATCATGTCCCAAGGAGAAAAGCTGCAGGCATCTGAGGATAAATCACTGTGAAACAGCTTTGACCATAAAGCTGACTTGGAAGACTTTGACTCCAAGGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156-'1-2,'1-1,2-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCTGAGTCTCGTCATGA
R:
TCTTTGACCTTGCTGGGGCTA
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)