HsaEX0045611 @ hg19
Exon Skipping
Gene
ENSG00000102699 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:271]
Coordinates
chr13:25052231-25058886:-
Coord C1 exon
chr13:25058791-25058886
Coord A exon
chr13:25056285-25056426
Coord C2 exon
chr13:25052231-25052414
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCAAAATCCTTTGTTGTCAGTTC
3' ss Score
4.47
5' ss Seq
ATTGTAATT
5' ss Score
-0.94
Exon sequences
Seq C1 exon
AGGGTTGCTTTTACCCAAAGTAGTGGAAGATCGTGGTGTGCAAAGAACAGACGTCGGAAACCTTGGAAGTGGGATTTATTTCAGTGATTCGCTCAG
Seq A exon
TTCAACAGTGTTCACAACATCTTCACCAGGAATGGATTCCATCTCAAGAAACCACTTTCTTCACTCATAAGAAGCAACTCCTCATTCTTTCAAGTTTGATCATGAGATTGCAGCAATTCAGTCCCATCTTCAGGCTCCAATT
Seq C2 exon
TACAAGTATCAAGTACTCACACCCGGGAGAGACAGATGGCACCAGACTCCTGCTCATTTGTGACGTAGCCCTCGGAAAGTGTATGGACTTACATGAGAAGGACTTTTCCTTAACTGAAGCACCACCAGGCTACGACAGTGTGCATGGAGTTTCGCAAACAGCCTCTGTCACCACAGACTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102699-'15-19,'15-16,16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.048
Domain overlap (PFAM):
C1:
PF0064415=PARP=FE(16.9=100)
A:
PF0064415=PARP=PD(13.1=66.7)
C2:
PF0064415=PARP=FE(32.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAGATCGTGGTGTGCAA
R:
ACAGAGGCTGTTTGCGAAACT
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)