HsaEX0046165 @ hg19
Exon Skipping
Gene
ENSG00000112541 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:8772]
Coordinates
chr6:165895803-165957056:-
Coord C1 exon
chr6:165956928-165957056
Coord A exon
chr6:165951916-165951971
Coord C2 exon
chr6:165895803-165895831
Length
56 bp
Sequences
Splice sites
3' ss Seq
GTAACATTAATTTCTTAAAGGCG
3' ss Score
3.89
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTTTGACAGATGAAAAAGTGAAGGCATATCTTTCTCTTCACCCCCAGGTATTAGATGAATTTGTATCTGAAAGTGTTAGTGCAGAGACAGTAGAGAAATGGCTGAAGAGGAAGAACAACAAATCAGAAG
Seq A exon
GCGAGTTACTTAGTATTCCAGAGGGTGATTGATGAACCCACAATCATTTGAAAATT
Seq C2 exon
ATGAATCAGCTCCTAAGGAAGTCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112541-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.159 A=0.900 C2=0.887
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(59.7=100),PF147691=CLAMP=FE(51.8=100)
A:
PF106984=DUF2505=PD(11.5=63.6)
C2:
PF072008=Mod_r=FE(12.5=100),PF147691=CLAMP=FE(10.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATATCTTTCTCTTCACCCCC
R:
CCTGCTGACTTCCTTAGGAGC
Band lengths:
136-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)