HsaEX0046863 @ hg19
Exon Skipping
Gene
ENSG00000087157 | PGS1
Description
phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:30029]
Coordinates
chr17:76415627-76420635:+
Coord C1 exon
chr17:76415627-76415756
Coord A exon
chr17:76416295-76416404
Coord C2 exon
chr17:76420142-76420635
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTGCTGCGGTTACAGAGC
3' ss Score
6.39
5' ss Seq
GAGGTACCC
5' ss Score
7.84
Exon sequences
Seq C1 exon
GAGCAAGAGCAGCTCTACCTGAGGTCAGGTGTGGTGTCCTCTGCCACCTTCGAGCAGCCGAGTCGCCAGGTGAAGCTGTGGGTGAAGATGGTGACTCCACTGATCAAGAACTTCTTCTGAGGACAGACAG
Seq A exon
AGCTGCGCCCTTCTAGACTCTGGAAGTTGAGTAACAGGACCTGCTCTGCCCACCCAGGAGGGGCCTGCCGCTTCACCAGAGGCACCAGTGGGGTCCCACAGTCACCTGAG
Seq C2 exon
GAATGGCCTTGATGAAGATGACAGGCATGGCCGGGGTCAGCTCTTTCAGCCGCGCTTCAGCGATGACTCCAGTCTGGGTGTCCCAGCGAGCCCCTGCAGGGACAGTATGGCTGAGGGTCAGGTGTGCTGCCAGTAAGTGAGGGAGGGGCTGGCAGGAAGGGTGGGGTCCTCACACTCCCCGCCCTCTGCAGAGCTGGGCTCTACCCCAAAAGGCTTCAGGCCAGCTGCCACGGCTGGAAGCAGAGGCCTTCGTAGGTGATGGCCTGCATGTTGTAACTACCCCGTCCCGCTGGGCTCAAGGAACAGCTCAGCTAAAGCCCTCGGGTTCCATCCGTTTAAATCTGTGGCATTTTCAGAGCCTCATCTGTCAGCCTTAATGTCAGTGGCAGGAAGTCATAACTCCAGCTAAAAATTACAGAGTAAAGTTCCCTGATTCTTAATGTGTAATGTCTGCCCTATGTGTACATACACAATATAATTATACATCTGTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087157_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(2.9=12.5)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAGCAGCTCTACCTGA
R:
CACCTGACCCTCAGCCATACT
Band lengths:
253-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)